Columbia University
Scientific Programmer - PACC (PMI-GenBAR)
Columbia University, New York, New York, us, 10261
Job Type: Officer of AdministrationRegular/Temporary: RegularHours Per Week: 35Salary Range: $75,000 - $85,000
The salary of the finalist selected for this role will be set based on a variety of factors, including but not limited to departmental budgets, qualifications, experience, education, licenses, specialty, and training. The above hiring range represents the University's good faith and reasonable estimate of the range of possible compensation at the time of posting.
Position SummaryThe Genomic & Bioinformatics Analysis Resource (GenBAR) of the Columbia Precision Medicine Initiative, is a unique interdisciplinary research environment specializing in human genetics and genomics. GenBAR is a key part of Columbia University's Precision Medicine Initiative to create a cohesive, university-wide research and teaching environment for human genetics/genomics. Together with academic and industrial partners, we aim to drive innovation in genomic medicine through vibrant research and apply them towards clinical applications that can directly benefit patients. Columbia University's Precision Medicine Initiative has established a genetics/genomics sequencing and analysis facility as a core part of this mission.We are looking for a highly motivated Scientific Programmer to join a talented group of bioinformatics scientists/statisticians and programmers to develop our NGS data pipeline.ResponsibilitiesWork with a team of bioinformaticians and a team of genomic analysts to develop a data pipeline and analysis toolsContribute to the development of new platforms and solutions for large integrative analysis of genomic dataAssist GenBAR staff and affiliates with data access, analysis, and interpretations; collaborate and consult with GenBAR researchers to analyze problems and recommend solutions to meet the computational needs for a wide range of biological researchPerform other projects and duties as assigned
Minimum QualificationsRequires a bachelor's degree or equivalent, plus two years of related experienceMaster's degree would substitute for experienceDemonstrated problem-solving skills, desire and ability to work effectively within a team, including strong organization and communication skillsWillingness and initiative to seek out and learn novel tools, methods, and technologies within a quickly evolving field
Preferred QualificationsExtensive knowledge of programming languages in either Java/C++ or 3+ years of Python in a production settingAn understanding of a wide range of data systems and platforms, such as data warehouses and data lakes, relational databases, such as MySQL and PostgreSQL, and NoSQL databasesSolid understanding of genetics, bioinformatics, and statistics as applied to NGS datasetsExperience in Unix/Linux, Bash Shell, GitExperience with software development in a cloud environment is a plusStrong understanding of the software development lifecycle
Other RequirementsSuccessful completion of applicable compliances and systems training requirements
Equal Opportunity Employer / Disability / VeteranColumbia University is committed to the hiring of qualified local residents.
The salary of the finalist selected for this role will be set based on a variety of factors, including but not limited to departmental budgets, qualifications, experience, education, licenses, specialty, and training. The above hiring range represents the University's good faith and reasonable estimate of the range of possible compensation at the time of posting.
Position SummaryThe Genomic & Bioinformatics Analysis Resource (GenBAR) of the Columbia Precision Medicine Initiative, is a unique interdisciplinary research environment specializing in human genetics and genomics. GenBAR is a key part of Columbia University's Precision Medicine Initiative to create a cohesive, university-wide research and teaching environment for human genetics/genomics. Together with academic and industrial partners, we aim to drive innovation in genomic medicine through vibrant research and apply them towards clinical applications that can directly benefit patients. Columbia University's Precision Medicine Initiative has established a genetics/genomics sequencing and analysis facility as a core part of this mission.We are looking for a highly motivated Scientific Programmer to join a talented group of bioinformatics scientists/statisticians and programmers to develop our NGS data pipeline.ResponsibilitiesWork with a team of bioinformaticians and a team of genomic analysts to develop a data pipeline and analysis toolsContribute to the development of new platforms and solutions for large integrative analysis of genomic dataAssist GenBAR staff and affiliates with data access, analysis, and interpretations; collaborate and consult with GenBAR researchers to analyze problems and recommend solutions to meet the computational needs for a wide range of biological researchPerform other projects and duties as assigned
Minimum QualificationsRequires a bachelor's degree or equivalent, plus two years of related experienceMaster's degree would substitute for experienceDemonstrated problem-solving skills, desire and ability to work effectively within a team, including strong organization and communication skillsWillingness and initiative to seek out and learn novel tools, methods, and technologies within a quickly evolving field
Preferred QualificationsExtensive knowledge of programming languages in either Java/C++ or 3+ years of Python in a production settingAn understanding of a wide range of data systems and platforms, such as data warehouses and data lakes, relational databases, such as MySQL and PostgreSQL, and NoSQL databasesSolid understanding of genetics, bioinformatics, and statistics as applied to NGS datasetsExperience in Unix/Linux, Bash Shell, GitExperience with software development in a cloud environment is a plusStrong understanding of the software development lifecycle
Other RequirementsSuccessful completion of applicable compliances and systems training requirements
Equal Opportunity Employer / Disability / VeteranColumbia University is committed to the hiring of qualified local residents.