Davita Inc.
Lead Bioinformatics Computational Engineer
Davita Inc., San Francisco, California, United States, 94199
Lead Bioinformatics Computational Engineer
IT EDW OperationsFull Time81012BRJob Summary
The CoreHPC team at UCSF is seeking a Lead Bioinformatics Computational Engineer to fill a technical leadership position in support of research workloads running on the new CoreHPC cluster. CoreHPC is the next-generation institutional HPC cluster focused on AI and Data Science.The Lead Bioinformatics Computational Engineer will:Apply advanced systems, algorithmic, coding, biological and infrastructure concepts to the engineering design, tuning, and operation of large-scale HPC and similar infrastructure.Select methods, techniques, and evaluation criteria to develop new HPC solutions to address complex biological and medical research problems.Validate the accuracy and repeatability of existing workflows when they are moved to the CoreHPC environment.Participate in multiple technical projects simultaneously.Apply domain knowledge of biological systems and concepts to facilitate the research being performed on the HPC systems.Give presentations to the associated team and other technical units on how to solve computational problems in various research domains.Provide training and consulting to technical users of the HPC systems.Evaluate new technologies and methodologies including performing moderate to complex cost/benefit analyses. May lead a team of related professionals.This position may lead cross-functional technical working groups and projects in support of onboarding research customers, or making systems improvements.The final salary and offer components are subject to additional approvals based on UC policy. Our placement within the salary range is dependent on a number of factors including your work experience and internal equity within this position classification at UCSF. For positions that are represented by a labor union, placement within the salary range will be guided by the rules in the collective bargaining agreement.The salary range for this position is $132,400 - $198,600 (Annual Rate).Department Description
Academic Research Systems (ARS) serves the needs of the UCSF research community by providing an integrated repository of HIPAA compliant clinical and life sciences data and a centralized, secure, professionally managed infrastructure for the storage and management of research data. ARS empowers medical scientific investigations by offering secure computing environments, data capture, management and analysis tools, and support services which meet researchers' needs.The Core HPC team of the Academic Research Service (ARS) focuses on large scale, high performance computational and storage services for UCSF researchers so they can address complex computational, AI, and data science problems.Required Qualifications
Bachelor's degree in computational, biological, neurological, or physiological fieldMaster's in computational, biological, neurological, or physiological fieldDemonstrated skill (5 years +) in deploying, managing, and troubleshooting scientific applicationsExpert knowledge of HPC systems infrastructure designExpert knowledge of applying biological systems concepts to solving computational research problems.Knowledge of HPC job scheduler system design and operation such as SLURM or PBSAbility to write technical documentation in a clear and concise manner.Ability to elicit and communicate technical and non-technical information in a clear and concise manner.Self-motivated and works independently and as part of a team.Understanding of system performance monitoring and actions that can be taken to improve or correct performance.Demonstrated advanced knowledge, skills, and abilities associated with problem identification and resolution for code and computational research toolsets.Demonstrated testing and test planning skills.Preferred Qualifications
PhD in computational, biological, neurological, or physiological fieldKnowledge of the design, development, and application of technology and systems to meet research needs.Strong experience writing and editing the most complex scripts used to perform system maintenance and administration.Strong knowledge of computer security best practices and policies including demonstrated experience securing research cyberinfrastructure systems to meet NIST 800-171 / 800-223, HIPAA, or IS-3 requirements.About UCSF
The University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research, graduate-level education in the life sciences and health professions, and excellence in patient care.Pride Values
UCSF is a diverse community made of people with many skills and talents. We seek candidates whose work experience or community service has prepared them to contribute to our commitment to professionalism, respect, integrity, diversity and excellence - also known as our PRIDE values.Equal Employment Opportunity
The University of California San Francisco is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, protected veteran or disabled status, or genetic information.Organization
CampusJob Code and Payroll Title
000520 SYS ADM 4Job Category
Clinical Systems / IT ProfessionalsBargaining Unit
99 - Policy-Covered (No Bargaining Unit)Employee Class
CareerPercentage
100%Location
Flexible (combination of onsite and remote work), Mission Center Building (SF), San Francisco, CAShift
DaysShift Length
8 Hours
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IT EDW OperationsFull Time81012BRJob Summary
The CoreHPC team at UCSF is seeking a Lead Bioinformatics Computational Engineer to fill a technical leadership position in support of research workloads running on the new CoreHPC cluster. CoreHPC is the next-generation institutional HPC cluster focused on AI and Data Science.The Lead Bioinformatics Computational Engineer will:Apply advanced systems, algorithmic, coding, biological and infrastructure concepts to the engineering design, tuning, and operation of large-scale HPC and similar infrastructure.Select methods, techniques, and evaluation criteria to develop new HPC solutions to address complex biological and medical research problems.Validate the accuracy and repeatability of existing workflows when they are moved to the CoreHPC environment.Participate in multiple technical projects simultaneously.Apply domain knowledge of biological systems and concepts to facilitate the research being performed on the HPC systems.Give presentations to the associated team and other technical units on how to solve computational problems in various research domains.Provide training and consulting to technical users of the HPC systems.Evaluate new technologies and methodologies including performing moderate to complex cost/benefit analyses. May lead a team of related professionals.This position may lead cross-functional technical working groups and projects in support of onboarding research customers, or making systems improvements.The final salary and offer components are subject to additional approvals based on UC policy. Our placement within the salary range is dependent on a number of factors including your work experience and internal equity within this position classification at UCSF. For positions that are represented by a labor union, placement within the salary range will be guided by the rules in the collective bargaining agreement.The salary range for this position is $132,400 - $198,600 (Annual Rate).Department Description
Academic Research Systems (ARS) serves the needs of the UCSF research community by providing an integrated repository of HIPAA compliant clinical and life sciences data and a centralized, secure, professionally managed infrastructure for the storage and management of research data. ARS empowers medical scientific investigations by offering secure computing environments, data capture, management and analysis tools, and support services which meet researchers' needs.The Core HPC team of the Academic Research Service (ARS) focuses on large scale, high performance computational and storage services for UCSF researchers so they can address complex computational, AI, and data science problems.Required Qualifications
Bachelor's degree in computational, biological, neurological, or physiological fieldMaster's in computational, biological, neurological, or physiological fieldDemonstrated skill (5 years +) in deploying, managing, and troubleshooting scientific applicationsExpert knowledge of HPC systems infrastructure designExpert knowledge of applying biological systems concepts to solving computational research problems.Knowledge of HPC job scheduler system design and operation such as SLURM or PBSAbility to write technical documentation in a clear and concise manner.Ability to elicit and communicate technical and non-technical information in a clear and concise manner.Self-motivated and works independently and as part of a team.Understanding of system performance monitoring and actions that can be taken to improve or correct performance.Demonstrated advanced knowledge, skills, and abilities associated with problem identification and resolution for code and computational research toolsets.Demonstrated testing and test planning skills.Preferred Qualifications
PhD in computational, biological, neurological, or physiological fieldKnowledge of the design, development, and application of technology and systems to meet research needs.Strong experience writing and editing the most complex scripts used to perform system maintenance and administration.Strong knowledge of computer security best practices and policies including demonstrated experience securing research cyberinfrastructure systems to meet NIST 800-171 / 800-223, HIPAA, or IS-3 requirements.About UCSF
The University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research, graduate-level education in the life sciences and health professions, and excellence in patient care.Pride Values
UCSF is a diverse community made of people with many skills and talents. We seek candidates whose work experience or community service has prepared them to contribute to our commitment to professionalism, respect, integrity, diversity and excellence - also known as our PRIDE values.Equal Employment Opportunity
The University of California San Francisco is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, protected veteran or disabled status, or genetic information.Organization
CampusJob Code and Payroll Title
000520 SYS ADM 4Job Category
Clinical Systems / IT ProfessionalsBargaining Unit
99 - Policy-Covered (No Bargaining Unit)Employee Class
CareerPercentage
100%Location
Flexible (combination of onsite and remote work), Mission Center Building (SF), San Francisco, CAShift
DaysShift Length
8 Hours
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